Resources

Genomic and epigenomic resources

Genome browser track data hubs: ChIP-sequencing data and other (epi) genomic data for visualization in the UCSC genome browser.
Xenopus track hub: X. tropicalis (v7.1, 8.0 9.0, 10.0), X. laevis (v9.1)
Mouse track hub: M. musculus mm10 assembly.

Improved gene annotation:
Dory Gene Pages: Doryteuthis pealeii gene resource

Protocols

ChIP protocol Xenopus embryos PDF
ChIP-sequencing in Xenopus embryos. PDF
ATAC-sequencing using Xenopus embryos. PDF

GitHub

Veenstra lab repositories
Files Xenopus xt10 genome

Other resources

ChIP-seq, RNA-seq and MethylCap-seq tracks (archive)
NimbleGen ChIP-chip microarray designs (archive)
Transcription start site and promoter collection (archive)