Publications

Publications listed at NCBI (PubMed)
Preprints at bioRxiv (early access to unpublished work)

Selected publications

Harlaar N, Dekker SO, Zhang J, Snabel RR, Veldkamp MW, Verkerk AO, Fabres CC, Schwach V, Lerink LJS, Rivaud MR, Mulder AA, Corver WE, Goumans MJTH, Dobrev D, Klautz RJM, Schalij MJ, Veenstra GJC, Passier R, van Brakel TJ, Pijnappels DA, de Vries AAF. 2022. Conditional immortalization of human atrial myocytes for the generation of in vitro models of atrial fibrillation. Nat Biomed Eng., 6, 389-402 (doi: 10.1038/s41551-021-00827-5).
Nature Biomedical Engineering         NCBI Accession GSE156824, GSE178473

Loh CH, van Genesen S, Perino M, Bark MR, Veenstra GJC. 2021. Loss of PRC2 subunits primes lineage choice during exit of pluripotency. Nat Commun., 12, 6985 (doi: 10.1038/s41467-021-27314-4).
Nature Communications          PDF          NCBI Accession GSE154572

Bright A.R., S. van Genesen, Q. Li, A. Grasso, S. Fröhlich, M. van der Sande, S.J. van Heeringen, G.J.C. Veenstra. 2021. Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates. EMBO J, e104913 (doi: 10.15252/embj.2020104913).
The EMBO Journal          PDF          NCBI GSE145619

Perino M., G. van Mierlo, C. Loh, S.M.T. Wardle, H. Marks, G.J.C. Veenstra. 2020. Two functional axes of feedback-enforced PRC2 recruitment in mouse embryonic stem cells. Stem Cell Reports, 15: 1287-1300 (doi: 10.1016/j.stemcr.2020.07.007).
Stem Cell Reports          PDF          NCBI GSE133085          UCSC track hub

Peñalosa-Ruiz G., V. Bousgouni, J.P. Gerlach, S. Waarlo, JV van de Ven, T.E. Veenstra, J.C.R. Silva, S.J. van Heeringen, C. Bakal, K.W. Mulder, G.J.C. Veenstra. 2019. WDR5, BRCA1, and BARD1 Co-regulate the DNA Damage Response and Modulate the Mesenchymal-to-Epithelial Transition during Early Reprogramming. Stem Cell Reports, 12, 743-756 (doi: 10.1016/j.stemcr.2019.02.006).
Stem Cell Reports          PDF          NCBI Accession GSE118680

Perino M., G. van Mierlo, I.D. Karemaker, S. van Genesen, M. Vermeulen, H. Marks, S.J. van Heeringen, G.J.C. Veenstra. 2018. MTF2 recruits Polycomb Repressive Complex 2 by helical shape-selective DNA binding. Nature Genetics, 50: 1002-1010 (doi: 10.1038/s41588-018-0134-8).
Nature Genetics        Springer Nature SharedIt Online        NCBI GSE94300          UCSC track hub

Gibeaux R, Acker R, Kitaoka M, Georgiou G, van Kruijsbergen I, Ford B, Marcotte EM, Nomura DK, Kwon T, Veenstra GJC, Heald R. 2018. Paternal chromosome loss and metabolic crisis contribute to hybrid inviability in Xenopus. Nature, 553, 337-341 (doi: 10.1038/nature25188).
Nature          PDF

Elurbe DM, Paranjpe SS, Georgiou G, van Kruijsbergen I, Bogdanovic O, Gibeaux R, Heald R, Lister R, Huynen MA, van Heeringen SJ, Veenstra GJC. 2017. Regulatory remodeling in the allo-tetraploid frog Xenopus laevis. Genome Biol., 18, page 198 (doi: 10.1186/s13059-017-1335-7.).
Genome Biology          PDF          UCSC Xenopus track hub

Session A.M., Y. Uno, T. Kwon, J.A. Chapman, A. Toyoda, S. Takahashi, A. Fukui, A. Hikosaka, A. Suzuki, M. Kondo, S.J. van Heeringen, (...), O. Bogdanovic, R. Lister, G. Georgiou, S.S. Paranjpe, I. van Kruijsbergen, (...), G.J.C. Veenstra, A. Fujiyama, R.M. Harland, M. Taira, D.S. Rokhsar. 2016. Genome evolution in the allotetraploid frog Xenopus laevis. Nature 538: 336-343 (doi: 10.1038/nature19840).
Nature          PDF          UCSC Xenopus track hub

Gazdag E., U.G. Jacobi, I. van Kruijsbergen, D.L. Weeks, G.J.C. Veenstra. 2016. Activation of a T-box-Otx2-Gsc gene network independent of TBP and TBP-related factors. Development, 143, 1340-1350 (doi:10.1242/dev.131664).
Development          PDF         

Hontelez S., I. van Kruijsbergen, G. Georgiou, S. J. van Heeringen, O. Bogdanovic, R. Lister, G.J.C. Veenstra. 2015. Embryonic transcription is controlled by maternally defined chromatin state. Nature Commun., 6, 10148 (doi: 10.1038/ncomms10148).
Nature Communications          PDF          NCBI GSE67974          UCSC Xenopus track hub

Reviews

Veenstra G.J.C. 2022. Dynamics of chromatin remodeling during embryonic development. In: S.A. Moody and A. Fainsod (eds.), Xenopus, from basic biology to disease models in the genomic era. CRC Press, Taylor and Francis (ISBN 9780367505271; doi: 10.1201/9781003050230).
Open access book chapter         

Peñalosa-Ruiz G., A.R. Bright, K.W.Mulder, G.J.C. Veenstra. 2019. The interplay of chromatin and transcription factors during cell fate transitions in development and reprogramming. Biochim Biophys Acta Gene regulatory mechanisms, 1862: 194407 (doi: 10.1016/j.bbagrm.2019.194407).
BBA - Gene Regulatory Mechanisms          PDF         

Perino M., G.J.C. Veenstra. 2016. Chromatin control of developmental dynamics and plasticity. Developmental Cell 38: 610-620. (doi: 10.1016/j.devcel.2016.08.004).
Developmental Cell          PDF         

Paranjpe S.S., G.J.C. Veenstra. 2015. Establishing pluripotency in early development. Biochim Biophys Acta, 1849, 626-636 (doi:10.1016/j.bbagrm.2015.03.006).
BBA          PDF         

Bogdanovic, O., S.J. van Heeringen, G.J.C. Veenstra. 2012. The epigenome in early vertebrate development. Genesis, 50, 192–206 (doi: 10.1002/dvg.20831).     
Wiley Online Library       PDF