Publications

* All publications listed at NCBI (PubMed)

Selected publications

Session A.M., Y. Uno, T. Kwon, J.A. Chapman, A. Toyoda, S. Takahashi, A. Fukui, A. Hikosaka, A. Suzuki, M. Kondo, S.J. van Heeringen, (...), O. Bogdanovic, R. Lister, G. Georgiou, S.S. Paranjpe, I. van Kruijsbergen, (...), G.J.C. Veenstra, A. Fujiyama, R.M. Harland, M. Taira, D.S. Rokhsar. 2016. Genome evolution in the allotetraploid frog Xenopus laevis. Nature 538: 336-343 (doi: 10.1038/nature19840).
www Nature          download PDF          tracks UCSC Xenopus track hub
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Gazdag E., U.G. Jacobi, I. van Kruijsbergen, D.L. Weeks, G.J.C. Veenstra. 2016. Activation of a T-box-Otx2-Gsc gene network independent of TBP and TBP-related factors. Development, 143, 1340-1350 (doi:10.1242/dev.131664).
www Development          download PDF         
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Bogdanovic O., A.H. Smits, E. de la Calle Mustienes, J.J. Tena, E. Ford, R. Williams, U. Senanayake, M.D. Schultz, S. Hontelez, I. van Kruijsbergen, T. Rayon, F.Gnerlich, T. Carell, G.J.C. Veenstra, M. Manzanares, T. Sauka-Spengler, J.R. Ecker, M. Vermeulen, J.L. Gomez-Skarmeta, R. Lister. 2016. Active DNA demethylation at enhancers during the vertebrate phylotypic period. Nature Genet., 48, 417-426 (doi:10.1038/ng.3522).
www Nature Genetics          download PDF         
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Hontelez S., I. van Kruijsbergen, G. Georgiou, S. J. van Heeringen, O. Bogdanovic, R. Lister, G.J.C. Veenstra. 2015. Embryonic transcription is controlled by maternally defined chromatin state. Nature Commun., 6, 10148 (doi: 10.1038/ncomms10148).
www Nature Communications          download PDF          data NCBI GSE67974          tracks UCSC Xenopus track hub
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Heeringen, S.J. van, R.C. Akkers, I. van Kruijsbergen, M.A. Arif, L.L.P. Hanssen, N. Sharifi, G.J.C. Veenstra. 2014. Principles of nucleation of H3K27 methylation during embryonic development. Genome Research, 24, 401-410 (doi: 10.1101/gr.159608.113).
www Genome Research          download PDF          data NCBI GSE41161          data Visualization tracks
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Bogdanovic, O., S.W. Long, S. J. van Heeringen, A.B. Brinkman, J.L. Gómez-Skarmeta, H.G. Stunnenberg, P.L. Jones and G.J.C. Veenstra. 2011. Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis. Genome Research, 21, 1313-1327 (doi: 10.1101/gr.114843.110).
www Genome Research          Email          data NCBI GSE23913          data Visualization tracks
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Van Heeringen, S.J., W. Akhtar, U.G. Jacobi, R.C. Akkers, Y. Suzuki, G.J.C. Veenstra. 2011. Nucleotide composition-linked divergence of vertebrate core promoter architecture. Genome Research, 21, 410-421.
www Genome Research          Email          data NCBI GSE21482          data Visualization tracks
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Akkers, R.C., S.J. van Heeringen, U.G. Jacobi, E.M. Janssen-Megens, K.-J. Françoijs, H.G. Stunnenberg and G.J.C. Veenstra. 2009. A hierarchy of H3K4me3 and H3K27me3 acquisition in spatial gene regulation in Xenopus embryos. Developmental Cell, 17, 425-434.
www Dev.Cell Online          Email          PMC PubMed Central         
data NCBI GSE14025          data Visualization tracks

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Jallow, Z., U.G. Jacobi, D.L. Weeks, I.B. Dawid and G.J.C. Veenstra. 2004. Specialized and redundant roles of TBP and a vertebrate-specific TBP paralog in embryonic gene regulation in Xenopus. Proc. Natl. Acad. Sci. USA., 101, 13525-13530.     
www PNAS Online          download PDF

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Veenstra, G.J.C., D.L. Weeks and A.P. Wolffe. 2000. Distinct roles for TBP and TBP-like factor in early embryonic gene transcription in Xenopus. Science, 290, 2312-2315.     
www Science       Email

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Jones P.L., G.J.C. Veenstra, P.A. Wade, D. Vermaak, S.U. Kass, N. Landsberger, J. Strouboulis, A.P. Wolffe. 1998. Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription. Nature Genetics, 19, 187-191.     
www Nature Genetics       Email

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Reviews

Perino M., G.J.C. Veenstra. 2016. Chromatin control of developmental dynamics and plasticity. Developmental Cell 38: 610-620. (doi: 10.1016/j.devcel.2016.08.004).
www Developmental Cell          download PDF         
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Paranjpe S.S., G.J.C. Veenstra. 2015. Establishing pluripotency in early development. Biochim Biophys Acta, 1849, 626-636 (doi:10.1016/j.bbagrm.2015.03.006).
www BBA          download PDF         
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Kruijsbergen I. van, S. Hontelez, G.J.C. Veenstra. 2015. Recruiting polycomb to chromatin. Int. J. Biochem. Cell Biol., 67, 177-187 (doi:10.1016/j.biocel.2015.05.006).
www Int. J. Biochem. Cell Biol.          download PDF         
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Bogdanovic, O., S.J. van Heeringen, G.J.C. Veenstra. 2012. The epigenome in early vertebrate development. Genesis, 50, 192–206 (doi: 10.1002/dvg.20831).     
www Wiley Online Library       download PDF

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Akhtar, W. and G.J.C. Veenstra. 2011. TBP-related factors: A paradigm of diversity in transcription initiation. Cell and Bioscience, 1, 23 (doi:10.1186/2045-3701-1-23)     
www Cell and Bioscience       download PDF          PMC PubMed Central

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Marks, H., G.J.C. Veenstra and H.G. Stunnenberg. 2010. Insightful tales from single embryonic cells. Cell Stem Cell, 6, 397-398.     
www Cell Stem Cell Online       Email

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RU horblack (1K)

Radboud University Faculty of Science Radboud Institute for Molecular Life Sciences Dept. Molecular Developmental Biology